PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01930.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27445.8 Da    PI: 5.2893
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01930.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.71.5e-281059251
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             +i+n + rqvtfskRr g++KKAeELSvLCda+va+i+fsstgkl+e++s
  Rsa1.0_01930.1_g00004.1 10 KIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLFEFCS 59
                             69**********************************************96 PP

2K-box51.93.4e-18931702097
                    K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                              + a+L kei    +++R++ Ge+L+ L+++eLqqLe++Le +l+++  +K+e ++++i++lq+k  +l +enk+Lr++
  Rsa1.0_01930.1_g00004.1  93 DNARLSKEIADKSHQLRQMRGEELQGLNIEELQQLEKALEAGLSRVIGTKSEKIMNEISDLQRKGMQLMDENKRLRQQ 170
                              5689999999999***************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.291161IPR002100Transcription factor, MADS-box
CDDcd002654.78E-40277No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-27323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-31376IPR002100Transcription factor, MADS-box
PfamPF003193.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.65887180IPR002487Transcription factor, K-box
PfamPF014861.9E-1794170IPR002487Transcription factor, K-box
Gene3DG3DSA:1.20.5.1704.9E-4148185No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSS TGKLFEFCSS  60
SMREVLERHN LQSKNLEKLD QPSLELQLVE NSDNARLSKE IADKSHQLRQ MRGEELQGLN  120
IEELQQLEKA LEAGLSRVIG TKSEKIMNEI SDLQRKGMQL MDENKRLRQQ GTQLTEENER  180
LGEQIYNNMH ERYGGVESEN TAVYEEGHSS ESITNAGNST GAPVDSESSD TSLRLGLRLP  240
YGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_D8e-19369268MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C8e-19369268MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B8e-19369268MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_A8e-19369268MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3p57_J9e-19369268Myocyte-specific enhancer factor 2A
3p57_I9e-19369268Myocyte-specific enhancer factor 2A
3p57_D9e-19369268Myocyte-specific enhancer factor 2A
3p57_C9e-19369268Myocyte-specific enhancer factor 2A
3p57_B9e-19369268Myocyte-specific enhancer factor 2A
3p57_A9e-19369268Myocyte-specific enhancer factor 2A
3kov_J9e-19369268Myocyte-specific enhancer factor 2A
3kov_I9e-19369268Myocyte-specific enhancer factor 2A
3kov_B9e-19369268Myocyte-specific enhancer factor 2A
3kov_A9e-19369268Myocyte-specific enhancer factor 2A
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9067180.0JQ906718.1 Brassica napus clone SVP-2 MADS-box protein SVP (SVP) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302826.11e-168MADS-box protein SVP-like
SwissprotQ9FVC11e-157SVP_ARATH; MADS-box protein SVP
TrEMBLI6TF571e-168I6TF57_BRANA; MADS-box protein SVP
STRINGBra030228.1-P1e-163(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41902747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-147MIKC_MADS family protein